Multiple softwares and tools analysis which can complete your work environment are available on HPCaVe platform. A standard Linux distribution is installed on scratchalpha and scratchbeta, along with standard tools used for development which are available by default.

The other available packages (compilers, parallel libraries…), described on tables below need to be loaded before using them.

However here are some useful commands you need to know before :

  • List all available modules

 

  • Load a module

Example:

 

  • List loaded modules

Example:

  • Unload a module from your environment

  • Unload all modules from your environment

  • Print the content of a module

Example:

 

Softwares Tables

 

COMPILERS
NAMEVERSIONDISTRIBUTIONUSAGE
Intel FC Compiler 2017 2017 Release 2ModuleFortran Compiler
Intel CC Compiler 20172017 Release 2 ModuleC C++Compiler
Intel MPI Compiler 20172017 Release 2 Modulempi Compiler
Intel CC Compiler 20182018 Base releaseModule Fortran Compiler
Intel FC Compiler 20182018 Base releaseModuleC C++Compiler
Intel MPI Compiler 20182018 Base releaseModulempi Compiler
Intel FC Compiler 20132013 Update 5ModuleFortran Compiler
Intel CC Compiler 20132013 Update 5ModuleC C++Compiler
Intel MPI Compiler 20132013 Update 5Modulempi Compiler
SGI MPT Performance Suite2.16 (Lastest. Default)Modulempi Compiler
Open MPI Compiler 1.10.3OSmpi Compiler
Open MPI Compiler 3.0.0Modulempi Compiler
LLVM3.8.0OSclang llvm compiler
JavaC1.8.0OSJava Compiler
GCC4.8.5OSGNU Compiler
GCC 66.2OSGNU Compiler 6.2 Toolchain
Cmake3.5.2OSGNU compiler Make Cmake
CMake3.9ModuleGNU compilateur Make Cmake
Bison2.7.6OSyacc Compiler
GHC4.8.2OSGlasgow Haskell Compiler
scons2.3.0OSAlternative to make
LIBRAIRIES
NAMEVERSIONDITRIBUTIONUSAGE
Boost1.61OSoptimization library
Boost1.65Moduleoptimization library
Blas3.5OSscientist library
Blas3.5.3Modulescientist library
Cairo1.15.2OSvectorial images library
Cblas20110120-7.8OSscientist library
cfitsio3.41OSflexible tranport image system library
cgal4.7OSgeometric computation library
dune2.4OShardware library CPU features
elpa2016.05OSscientist library
eigen3.2.2OSeigen solver library
fftw22.1OSscientist library
fftw33.3.5OS / Module with petscscientist library
geos3.6.1OSOpen Source geometry engine library
gsl 2.4OS and Modulescientist library
hdf4.2.11OSscientist library
hdf51.1OS and Module with petscscientist library
hdf5Conda envscientist library
lapack3.5.0OSscientist library
lapacke3.5OSscientist library
HYPRE2.8.0bOSscientist library
exiv20.23OSphoto metadata editor
libjpeg62.1.0OSgraphic jpeg library
liblzma5.0.5OSlzma library
libpng1.6.8OSgraphic png library
libtiff4.0.8OSgraphic tIFF library
libxslt1.1.28OSxml library
libxml22.9.4OSxml library
metis5.1.0OS and Module via petscscientist library
mpc1.03OSarithmetic complex number
mpfr3.1.2OSmultiple precision computing library
mumps4.9.2OS scientist library
mumps5.1.1Module via petscscientist library
mvapich22.2.12OSNetwork based computing library
netcdf44.4.1OS and module via petscscientist library
openMPI1.1OS Defaultmessage passing interface
OpenMPI3.0.0Modulemessage passing interface
openblas0.2.20OSscientist library
pARMS3.2OS and Module via petscscientist library
plumed4.2Modulefree energy calculation library
pnetcdf1.7.0OSscientist library
pastix5.2.2OS and Module via petscscientist library
pcre8.39OSperl compatible regular expression lib
pcre210.30.26OSperl compatible regular expression lib
petsc3.4.3OSscientist library
petsc3.8Modulescientist library
scalapack2.0.2OS and Module via petscscientist library
scotch6.0.4OSscientist library
slepc3.4.3OSscientist library
slepc3.8.2Modulescientist library
superlu5.2OS and Module via petscscientist library
tetgen1.5OS and Module via petscscientist library
triangle1.6.1OS and Module via petscscientist library
trlan201009OSscientist library
udunits2.2.25OSarithmetic complex number manipulation
udunits22.2.25OSarithmetic complex number manipulation
FRAMEWORKS
NAMEVERSIONDITRIBUTIONUSAGE
CP2K5.1.2Modulequantum chemistry and solid state physics software
FDS6ModuleFire dynamics simulator
GMP6.1.2OSLinux multiplrécision Tools
GMP ECM7.0.4OSElliptic Curve Method for Integer Factorization
Global Array6.4.3ModulePartitioned Global Address Space (PGAS) programming model
Gromacs2016..3-2.1OSGROningen MAchine for Chemical Simulations
Gromacs5.1.4 with Cuda supportModuleGROningen MAchine for Chemical Simulations
Gtk22.24.31OSGraphical User Interface developpement
Gtk33.20.10OSGraphical User Interface developpement
Harfbuzz1.4.5OSRendu polices vectorielles
harfbuzzConda Rendu polices vectorielles
Jags4.4OSGibbs Sampler
Jags4.3ModuleGibbs Sampler
Java OpenJDK 1.8OSJava Toolkit
Java OpenJDK 1.7OSJava Toolkit
LAMPPS20130412OSMolecular Dynamic Simulation
LAMPPS2017ModuleMolecular Dynamic Simulation
NAMD2012 & 2017Moduleparallel molecular dynamics code
NCBI Blast6.1OSThe Basic Local Alignment Search Too
OpenFOAM4.1ModuleSolver and Physical Models
OpenBugs2.3ModuleBayesian Inference Gibbs Sampler
Orca3.20.3OSmodern electronic structure program package
Paraview5.2Conda environnementVisualisation de modèles
Quantum espresso5.1.2OSOpen-Source computer codes for electronic-structure calculation
Quantum espresso6.2ModuleOpen-Source computer codes for electronic-structure calculation
ufraw0.19OSphoto rendering manipulation
ufraw0.22Module with intel mpiphoto rendering manipulation
Cuda9ModuleCuda developpement Toolkit GPU Nodes
IMPORTANT PYTHON PACKAGES
NAMEVERSIONDISTRIBUTIONUSAGE
Alabastermodule load python-X
Bioconductor source activate myenv
blast
boost
Bowtie
Harffbuzz
Hdf5
Ipython
Jedi
Lua
MKL
Netcdf
Numpy
petsc
R
rna-seq
ScikitPresent in respective conda
ScipY
scotch
slepsc
Spyder
Sympyenvironnement
Torchiscd.upmc.fr/mesu
Werkzeug
Ypda
DEBUG - VERSIONNING
NAMEVERSIONDISTRIBUTIONUSAGE
CVS1.12.12OSVersionning and download tool
Git2.12OSVersionning and download tool
Intel Itac 20132013 Update 5ModuleDebug bench
Intel Itac 20172017 Update 2ModuleDebug bench
Intel Itac 20182018 Release ModuleDebug bench
Intel TBB2018 et 2013ModuleDebug
Intel Vtune2018 et 2013Module
Mercurial2.8.2OSVersionning and download tool
Subversion1.8.19OSVersionning and download tool
IDE - TEXT EDITORS
NAMEVERSIONDISTRIBUTIONUSAGE
eclipse4.4OSIDE java
emacs24.3OSEditeur texte
expat2.1.0OSXML Parser
gedit3.2OSEditeur texte
gvim7.4OSEditeur texte
nano2.7OSEditeur texte
texlive2013OSLaTEX
tk8.6OSInterpreteur Tcl
vim7.4OSEditeur texte
vte0.44OSTerminal emulator
vte20.28OSTerminal emulator
xalan C C++1.11OSXML Parser
xalan Java2.7OSXML Parser Java
xerces C C++3.1.4OSXML Parser
xerces Java2.8.1OSXML Parser Java
X ORG - LIBS MESA
NAMEVERSIONDISTRIBUTIONUSAGE
freeglut2.8.1OSLibraries graphiques
gegl0.2.0OSLibraries graphiques
glew1.10OSLibraries graphiques
glu9.0.0OSLibraries graphiques
glucat0.8OSLibraries graphiques
Gtk22.0.0OSLibraries graphiques
Gtk33.20.10OSLibraries graphiques
libQT55.6.1OSLibraries graphiques
MeSA11.2.1OSLibraries graphiques
mmg3d52017Modulesimplicial remeshing
TOOLS
NAMEVERSIONDISTRIBUTIONUSAGE
bzip1.06OScompression
blktrace1.0.5OS IO tracing mechanism
curl7.37OSdownoads
Docbook4.5OSDocumentation maker
doxygen1.8.6OSDocumentation maker
ffmpeg3.3.4OSTraitement flux audio video
flex2.5OSFast lexical analyzer
gmsh2.1OSmesh visualiseur
gnuplot4.6.5OSgrapheur
graphviz2.28OSgrapheur
gzip1.6.7OScompression
Imagemagic6.8.8OSimage manipulateur
lcms1.19OSColor management library
lcms22.2.7OSColor management library
lensfun0.2.8OSPhoto Lens adjustement tool
mathomatic16.0.4OSComputer algebra system
medit2017Modulemesh visualiseur
mpiplace2OS and ModulesOptimisation MPI
NCO4.7ModuleNetCDF Toolkit
ncurses5.9OSDeveloppement API
Ncview2.1.7ModuleNetCDF visualiseur
openjpeg22.1.2OSOutils JPEG
perfboost1.16OS ModuleOptimisation MPI
perfcatcher26ModuleBenchmark
screen4.0.4OSSessions SSH détachables
wget1314OSdownload
xjobs2017ModuleParallel multiple commands
xz5.0.5OScompression
zlib1.2.8OScompression
LANGUAGE
NAMEVERSIONDISTRIBUTIONUSAGE
Freefem++3.6Moduleresolution of partial differential equation
lua5.2OS
luaConda environnement
Octave4.2OS
Perl 5.18OS
Perl 5.2Conda environnement
Python2.7.13OS
Python 2.7.13Conda environnement
Python33.4.6OS
Python33.6Conda environnement
Ryby2.1OS
tcl8.6OS
tcsh6.18OS
vtk66.3OS
zsh5.0.5OS